SPIDER is one of the most widely-used image processing packages in the Nogales Lab. (More information about SPIDER...)

SPIDER

Compiling SPIDER For Linux With Portland Group (PGI) Compilers

How to build a portable compile of the OpenMP and serial versions of SPIDER with The Portland Group compiler, for Linux machines with multiple processors. Makefiles are included for P4/Xeon and AMD64/Opteron platforms. Last updated April 11, 2006.

Compiling MPI-SPIDER for Linux with Portland Group (PGI) Compilers

How to build a version of SPIDER with support for parallelism using MPI for certain operations, with The Portland Group compiler. Makefiles are included for P4/Xeon and AMD64/Opteron platforms. Last updated June 26, 2006.

Compiling & Optimizing FFTW for SPIDER

Last updated March 31, 2006.

Web

Compiling And Using 24-bit Web For Linux

How to compile and use the 24-bit color version of Web on the Linux platform. Last updated June 2, 2005.

Compiling And Using 8-bit Web With A 24-Bit X Server

Last updated March 31, 2006.

Relevant Publications

C. Yang, P.A. Penczek, A. Leith, F.J. Asturias, E.G. Ng, R.M. Glaeser, J. Frank. The parallelization of SPIDER on distributed-memory computers using MPI. (2006) J Struct Biol., Epub ahead of print.

C. Yang, E.G. Ng, P.A. Penczek. Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm. (2006) J Struct Biol., Epub ahead of print.

W.T. Baxter, A. Leith, J. Frank. SPIRE: The SPIDER reconstruction engine. (2006) J Struct Biol., Epub ahead of print.

Other External Resources

SPIDER documentation pages

« http://www.wadsworth.org/spider_doc/spider/docs/master.html »