These are some very simple Perl scripts that help us get our work done. Most are for moving intermediate results back and forth between SPIDER, IMAGIC, FREALIGN and EMAN.

boxdb2spi

Transfer particle coordinates from Boxer boxdb to SPIDER format.

ctf2spi

Transfer CTF parameters from CTFTILT (part of the FREALIGN package) to SPIDER.

spi2boxdb

Transfer particle coordinates from SPIDER to Boxer format.

lis2spi

Use an IMAGIC classification in SPIDER.

plt2spi

Use an IMAGIC alignment in SPIDER.

cullbyclass

Use an IMAGIC or SPIDER classification to cull a boxdb dataset.